TREEPEACE

FROM HOLOCENE TO ANTHROPOCENE: THE PACE OF MICROEVOLUTION IN TREES

TREEPEACE

Publications

Articles

2024

  • Chakraborty D,  Ciceu A, Ballian D, Benito-Garzon M, Bolte A, Bozic G, Buchacher R, Cepi J, Cremer E, Ducousso A, Gaviria J, George JP, Hardtke A, Ivankovic M, Klisz M, Kowalczyk J, Kremer A, Lstiburek M, Longauer R, Mihai G, Nagy L, Petkova K, Popov E, Schirmer R, Skroppa T, Mortvedt Solvin T, Steffenrem A, Stejskal J, Stojnic S, Volmer K, Schueler S  2024.  Assisted migration can preserve the European forest carbon sink under climate change. Nature Climate Change 1-8 (PDF)
  • Antoine Kremer, 2024. Ancient DNA, oaks, forests and humans. International Oaks 35 : 45-58 (PDF)
  • Antoine Kremer, 2024. Evolution biologique des arbres et évolution climatique. Futuribles 461 : 1-18 (PDF)
  • Antoine Kremer, Adline Delcamp, Isabelle Lesur, Stefanie Wagner, Christian Rellstab, Erwan Guichoux, Thibault Leroy 2024. Whole-genome screening for near-diagnostic markers for four western European white oak species. Annals of Forest Science  81:21 (PDF)
  • Stefanie Wagner, Andaine Seguin-Orlando, Jean-Charles Leplé, Thibault Leroy, Céline Lalanne, Karine Labadie, Jean-Marc Aury, Sandy Poirier, Patrick Wincker, Antoine Kremer, Ludovic Orlando 2023. Tracking population structure and phenology through time using ancient genomes from waterlogged white oak wood. Molecular Ecology 33(3): e16859 (PDF)
  • Thomas Caignard, Laura Truffaut, Sylvain Delzon, Benjamin Dencausse, Laura Lecacheux, José M. Torrez-Ruiz, Antoine Kremer 2023 Fluctuating selection and rapid evolution of oaks during recent climatic transitions. Plants People Planet 6(1): 221-237 (PDF)

2023

  • Antoine Kremer, Laurent Bouffier 2023. A different perspective about the contemporary evolution of forests. The Conversation (Text in French)
  • Antoine Kremer, Thibault Leroy, Christophe Plomion 2023 Genetic diversity of trees is the fuel for adaptation to climate change. Forêt Nature (Text in French)
  • Grégoire Le Provost, Lalanne, Isabelle Lesur, Jean-Marc Louvet, Sylvain Delzon, Antoine Kremer, Karine Labadie, Jean-Marc Aury, Corinne Da Silva, Thomas Moritz, Christophe Plomion  2023. Oak stands along an elevational gradient have different molecular strategies for regulating bud phenology. BMC Plant Biology  23 (1): 108 (PDF)
  • Jean-Paul Soularue, Cyril Firmat, Thomas Caignard, Armel Thöni, Léo Arnoux, Ophélie Ronce, Antoine Kremer 2023. Antagonistic effects of assortative mating on the evolution of phenotypic plasticity along environmental gradients. American Naturalist  202 (1) : (PDF)

2022

  • Ruirui Fu, Yuxiang Zhu, Ying Liu, Yu Feng, Rui-Sen Lu, Yao Li, Pan Li, Antoine Kremer, Martin Lascoux, Jun Chen 2022 Genome-wide analyses of introgression between two sympatric Asian oak species. Nature Ecology & Evolution  (PDF)
  • Saleh D, Chen J, Leplé JC, Leroy T, Truffaut L,  Dencausse B, Lalanne C, Labadie K, Lesur I, Bert B, Lagane F, Morneau F, Aury JM, Plomion C, Lascoux M, Kremer A 2022. Genome-wide evolutionary response of European oaks during the Anthropocene. Evolution Letters 6-1:4-20 (PDF)

2021

  • Saleh D, Chen J, Leplé JC, Leroy T, Truffaut L,  Dencausse B, Lalanne C, Labadie K, Lesur I, Bert B, Lagane F, Morneau F, Aury JM, Plomion C, Lascoux M, Kremer A 2021. Genome-wide evolutionary response of European oaks since the Little Ice Age. BioRxiv (PDF)
  • Kremer A 2021. Evolution in action : rapid genetic and demographic changes in Q.petraea and Q.robur. International Oaks 32: 25-34
  • Caignard T, Kremer A, Bouteiller X, Parmentier J, Louvet JM, Venner S, Delzon S  2021. Counter gradient variation of reproductive effort in a widely distributed temperate oak (Quercus petraea). Functional Ecology (PDF)
  • Kremer A, Plomion C, Leroy T., Alexandre H, Truffaut L, Delzon S, Ducousso A, Musch B, Torres-Ruiz JM, Wagner S, 2020. Evolution passée et contemporaine des chênes. Revue Forestière Française 73, 4 : 297-317 (PDF)

2020

  • Alexandre H, Truffaut L, Klein E, Ducousso A, Chancerel E, Lesur I, Dencausse B, Louvet JM, Gérard Nepveu G, Torres‐Ruiz JM, Lagane F, Musch B, Delzon S, Kremer A 2020. How does contemporary selection shape oak phenotypes ? Evolutionary Applications
  • Kremer A, Hipp AL 2020. Oaks : an evolutionary success story. New Phytologist 226 : 987-1011 (PDF)
  • Alexandre H, Truffaut L, Ducousso A, Louvet JM, Nepveu G, Torres-Ruiz JM, Lagane F, Firmat C, Musch B, Delzon S, Kremer A 2020. In situ estimation of genetic variation of functional and ecological traits in Q. petraea and Q.robur. Tree Genetics & Genomes 16 : 32 (PDF)
  • Leroy T, Louvet JM, Lalanne C, Le Provost G, Labadie K, Aury JM, Delzon S, Plomion C, Kremer A 2020. Adaptive introgression as a driver of local adaptation to climate in European white oaks. New Phytologist 226 : 1171-1182 (PDF)
  • Hipp AL, Manos PS, Hahn M, Avishai M, Bodénès C, Cavender-Bares J, Crowl A, Deng M, Denk T, Gailing O, González-Elizondo MS, González-Rodríguez A, Grimm G, Jiang XL, Kremer A, Lesur I, McVay J, Plomion C, Rodríguez-Correa , Schulze ED, Simeone MC, Sork V, Valencia AS 2020. The genomic landscape of the global oak phylogeny. New  Phytologist 226 : 1198-1212 (PDF)
  • Leroy T, Rougemont Q, Dupouey JL, Bodénès C, Lalanne C, Belser C, Labadie K, Le Provost G, Aury JM, Kremer A, Plomion C 2020. Massive postglacial gene flow between European white oaks uncovered genes underlying species barriers. New Phytologist 226 : 1183-1197 (PDF)

2019

  • Torres-Ruiz JM, Kremer A, Carins-Murphy MR, Brodribb TJ, Lamarque LJ, Truffaut L, Bonne F, Ducousso A, Delzon S. 2019. Genetic differentiation in functional traits among European sessile oak populations. Tree Physiology 39 : 1736-1749  (PDF)
  • Leroy T, Plomion C, Kremer A 2019. Oak symbolism in the light of genomics. New Phytologist (PDF)
  • Pont C, Wagner S, Kremer A, Orlando L, Plomion C, Salse J 2019. Paleogenomics: reconstruction of plnat evolutionary trajectories from modern and ancient DNA. Genome Biology 20: 29 (pdf)
  • Caignard T, Delzon S, Bodénès C, Dencausse B, Kremer A 2019. Heritability and genetic architecture of reproductive related traits in a temperate oak species. Tree Genetics & Genomes (DOI: 10.1007/s11295-018-1309-2) (Postprint pdf)
  • Sáenz-Romero C, Kremer A, Nagy L, Újvári-Jármay É, Ducousso A, Kóczán-Horváth A, Hansen JK, Mátyás C.2019. Common garden comparisons confirm inherited differences in sensitivity to climate change between forest tree species. PeerJ7:e6213 (PDF). http://doi.org/10.7717/peerj.6213
  • Soularue JP,  Thöni A,  Arnoux A,  Le Corre V, Kremer A 2019. Metapop: an individual-based model for simulating the evolution of tree populations in spatially and temporally hetreogeneous environments. Molmecular Ecology resources. https://doi.org/10.1111/1755-0998.12958

2018

  • Leroy T, Kremer A, Plomion C 2018. Oak tree symbolism in the light of genomics. New Phytologist. Submitted. (Preprint pdf).
  • Plomion C,  Aury JM,  Amselem J,  Leroy T, Murat F,  Duplessis S,  Faye S, Francillonne N, Labadie K, Le Provost G,  Lesur I,  Bartholomé J,  Faivre-Rampant P,  Kohler A,  Leplé JC,  Chantret N,  Chen J, Diévart A,  Alaeitabar T,  Barbe V,  Belser C,  Bergès H,  Bodénès C,  Bogeat-Triboulot MB,  Bouffaud ML,  Brachi B,  Chancerel E,  Cohen D,  Couloux A,  Da Silva C,  Dossat C,  Ehrenmann F,  Gaspin C,  Grima-Pettenati J,  Guichoux E,  Hecker A, Herrmann S, Hugueney P,  Hummel I, Klopp C, Lalanne C,  Lascoux M, Lasserre E,  Lemainque A,  Desprez-Loustau ML,  Luyten I,  Madoui MA, Mangenot S,  Marchal C,  Maumus F,  Mercier J,  Michotey C,  Panaud O, Picault N, Rouhier N, Rué N,  Rustenholz C,  Salin F,  Soler M,  Tarkka M, Velt A,  Zanne AE, Martin F,  Wincker P, Quesneville H,  Kremer A,  Salse J 2018.  Oak genome reveals facets of long lifespan. Nature Plants. doi:  https://doi.org/10.1038/s41477-018-0172-3
  • Wagner S,   Lagane F,  Seguin-Orlando A, Schubert M,  Leroy T, Guichoux E,  Chancerel E, Bech-Hebelstrup I, Bernard V,  Billard C,  Billaud Y,   Bolliger M,  Croutsch C,  Čufar K,  Eynaud F,  Heussner KU,  Köninger J,  Langenegger F,  Leroy F,  Lima C,  Martinelli N,  Momber G,  Billamboz A,  Nelle O,  Palomo A,  Piqué R,  Ramstein M,  Schweichel R,  Stäuble H, Tegel W,  Terradas X,  Verdin F,   Plomion C,  Kremer A, and L. Orlando. 2018. High-throughput DNA sequencing of ancient wood. Molecular Ecology 27, 1138-1154.  doi: https://doi.org/10.1111/mec.14514 (Post print)
  • Lesur I., Alexandre, H., Boury C., Chancerel E., Plomion C., Kremer A. 2018. Development of target sequence capture and estimation of genomic relatedness in a mixed oak stand. Frontiers in Plant Science. Submitted. (Preprint pdf). Find here Supporting information.
  • Lobo A,Torres-Ruiz J.M. , Burlett R, Lemaire C, Parise C, Francioni C, Truffaut L, Tomášková I, Hansen J.K, Kjær E.D, Kremer A and Delzon S. Assessing inter- and intraspecific variability of xylem vulnerability to embolism in oaks. Forest Ecology and Management, Volume 424, 15 September 2018, Pages 53–61. doi: 10.1016/j.foreco.2018.04.031 (Preprint pdf)

2017

  • Caignard T, Kremer A, Firmat C, Nicolas M, Venner S, Delzon S. Increasing spring temperatures favor oak seed production in temperate areas. Scientific reports. doi:10.1038/s41598-017-09172-7 (Preprint pdf)
  • Merceron NR, Leroy T, Chancerel E, Romero-Severson J, Borkowski D.S,Ducousso A, Monty A, Porté AJ, Kremer A. Back to America: tracking the origin of European introduced populations of Quercus rubra L. Genome. doi : 10.1139/gen-2016-0187 (Preprint pdf)
  • Truffaut L, Chancerel E, Ducousso A, Dupouey JL, Badeau V, Ehrenmann F, Kremer. A Fine scale species distribution changes in a mixed oak stand over two successive generations. New Phytologist. doi: 10.1111/nph.14561 / (Preprint pdf)
  • Leroy T, Roux C, Villate L, Bodénès C, Romiguier J, Paiva JAP, Dossat C, Aury JM, Plomion C, Kremer A. Extensive recent secondary contacts between four European white oak species. New Phytologist. doi:10.1111/nph.14413  / (Postprint pdf)
  • Sáenz-Romero C, Lamy JB, Ducousso A, Musch B, Ehrenmann F, Delzon S, Chałupka W,  Daḡdas S, Hansen JK, Lee SL, Liesebach M, Rau HM, Psomas A, Schneck V, Steiner W, Zimmermann NE, Kremer A 2017 Adaptive and plastic population response of Quercus petraea across Europe. Glob Change Biol. doi:10.1111/gcb.13576 / (Preprint pdf)

2016

  • Plomion C, Aury JM, Amselem J, Alaeitabar T, Barbe V,  Belser C,  Berges H, Bodénès C, Boudet N, Boury C, Canaguier A,  Couloux A, Da Silva C, Duplessis S, Ehrenmann F, Estrada-Mairey B,  Fouteau S,  Francillonne N, Gaspin C,  Guichard C,  Klopp C, Labadie K, Lalanne C,  Le Clainche I,  Leplé JC, Le Provost G,  Leroy T,  Lesur I,  Martin F, Mercier J, Michotey C, Murat F,  Salin F,  Steinbach D, Faivre-Rampant P, Wincker P,  Salse J, Quesneville H,  Kremer A. 2016 Decoding the oak genome: public release of sequence data, assembly, annotation and publication strategies. Molecular Ecology Resources 16: 254-265 doi: 10.1111/1755-0998.12425
  • Kremer A 2016 Microevolution of European temperate oaks in response to environmental changes. Comptes rendus Biologies 339: 263-267. doi : 10.1016/j.crvi.2016.04.014
  • Bodénès C, Chancerel E, Ehrenmann F, Kremer A, Plomion C 2016 High density linkage mapping and distribution of segregation distorsion regions in oak genome.  DNA Research 23: 115-124 doi: 10.1093/dnares/dsw001
  •  Choat B, Badel E,  Burlett R, Delzon S, Cochard H and Jansen S 2016 Non-invasive measurement of vulnerability to drought induced embolism by X-ray microtomography. Plant Physiology pp-00732 doi: 10.1104/pp.15.00732

2014

  • Soularue JP, Kremer A 2014 Evolutionary responses of tree phenology to the combined effects of assortative mating, gene flow and divergent selection. Heredity  113:  485-494 doi: 10.1038/hdy.2014.51


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